NAME
Statistics::Contingency - Calculate precision, recall, F1, accuracy,
etc.
SYNOPSIS
use Statistics::Contingency;
my $s = new Statistics::Contingency(categories => \@all_categories);
while (...something...) {
...
$s->add_result($assigned_categories, $correct_categories);
}
print "Micro F1: ", $s->micro_F1, "\n"; # Access a single statistic
print $s->stats_table; # Show several stats in table form
DESCRIPTION
The `Statistics::Contingency' class helps you calculate several useful
statistical measures based on 2x2 "contingency tables". I use these
measures to help judge the results of automatic text categorization
experiments, but they are useful in other situations as well.
The general usage flow is to tally a whole bunch of results in the
`Statistics::Contingency' object, then query that object to obtain the
measures you are interested in. When all results have been collected,
you can get a report on accuracy, precision, recall, F1, and so on, with
both macro-averaging and micro-averaging over categories.
Macro vs. Micro Statistics
All of the statistics offered by this module can be calculated for each
category and then averaged, or can be calculated over all decisions and
then averaged. The former is called macro-averaging (specifically,
macro-averaging with respect to category), and the latter is called
micro-averaging. The two procedures bias the results differently -
micro-averaging tends to over-emphasize the performance on the largest
categories, while macro-averaging over-emphasizes the performance on the
smallest. It's often best to look at both of them to get a good idea of
how your data distributes across categories.
Statistics available
All of the statistics are calculated based on a so-called "contingency
table", which looks like this:
Correct=Y Correct=N
+-----------+-----------+
Assigned=Y | a | b |
+-----------+-----------+
Assigned=N | c | d |
+-----------+-----------+
a, b, c, and d are counts that reflect how the assigned categories
matched the correct categories. Depending on whether a macro-statistic
or a micro-statistic is being calculated, these numbers will be tallied
per-category or for the entire result set.
The following statistics are available:
* accuracy
This measures the portion of all decisions that were correct
decisions. It is defined as `(a+d)/(a+b+c+d)'. It falls in the range
from 0 to 1, with 1 being the best score.
Note that macro-accuracy and micro-accuracy will always give the
same number.
* error
This measures the portion of all decisions that were incorrect
decisions. It is defined as `(b+c)/(a+b+c+d)'. It falls in the range
from 0 to 1, with 0 being the best score.
Note that macro-error and micro-error will always give the same
number.
* precision
This measures the portion of the assigned categories that were
correct. It is defined as `a/(a+b)'. It falls in the range from 0 to
1, with 1 being the best score.
* recall
This measures the portion of the correct categories that were
assigned. It is defined as `a/(a+c)'. It falls in the range from 0
to 1, with 1 being the best score.
* F1
This measures an even combination of precision and recall. It is
defined as `2*p*r/(p+r)'. In terms of a, b, and c, it may be
expressed as `2a/(2a+b+c)'. It falls in the range from 0 to 1, with
1 being the best score.
The F1 measure is often the only simple measure that is worth trying to
maximize on its own - consider the fact that you can get a perfect
precision score by always assigning zero categories, or a perfect recall
score by always assigning every category. A truly smart system will
assign the correct categories and only the correct categories,
maximizing precision and recall at the same time, and therefore
maximizing the F1 score.
Sometimes it's worth trying to maximize the accuracy score, but accuracy
(and its counterpart error) are considered fairly crude scores that
don't give much information about the performance of a categorizer.
METHODS
The general execution flow when using this class is to create a
`Statistics::Contingency' object, add a bunch of results to it, and then
report on the results.
* $e = Statistics::Contingency->new()
Returns a new `Statistics::Contingency' object. Expects a
`categories' parameter specifying the entire set of categories that
may be assigned during this experiment. Also accepts a `verbose'
parameter - if true, some diagnostic status information will be
displayed when certain actions are performed.
* $e->add_result($assigned_categories, $correct_categories, $name)
Adds a new result to the experiment. The lists of assigned and
correct categories can be given as an array of category names
(strings), as a hash whose keys are the category names and whose
values are anything logically true, or as a single string if there
is only one category.
If you've already got the lists in hash form, this will be the
fastest way to pass them. Otherwise, the current implementation will
convert them to hash form internally in order to make its
calculations efficient.
The `$name' parameter is an optional name for this result. It will
only be used in error messages or debugging/progress output.
In the current implementation, we only store the contingency tables
per category, as well as a table for the entire result set. This
means that you can't recover information about any particular single
result from the `Statistics::Contingency' object.
* $e->set_entries($a, $b, $c, $d)
If you don't wish to use the c interface, but still
take advantage of the calculation methods and the various edge cases
they handle, you can directly set the four elements of the
contingency table with this method.
* $e->micro_accuracy
Returns the micro-averaged accuracy for the data set.
* $e->micro_error
Returns the micro-averaged error for the data set.
* $e->micro_precision
Returns the micro-averaged precision for the data set.
* $e->micro_recall
Returns the micro-averaged recall for the data set.
* $e->micro_F1
Returns the micro-averaged F1 for the data set.
* $e->macro_accuracy
Returns the macro-averaged accuracy for the data set.
* $e->macro_error
Returns the macro-averaged error for the data set.
* $e->macro_precision
Returns the macro-averaged precision for the data set.
* $e->macro_recall
Returns the macro-averaged recall for the data set.
* $e->macro_F1
Returns the macro-averaged F1 for the data set.
* $e->stats_table
Returns a string combining several statistics in one graphic table.
Since accuracy is 1 minus error, we only report error since it takes
less space to print. An optional argument specifies the number of
significant digits to show in the data - the default is 3
significant digits.
* $e->category_stats
Returns a hash reference whose keys are the names of each category,
and whose values contain the various statistical measures (accuracy,
error, precision, recall, or F1) about each category as a hash
reference. For example, to print a single statistic:
print $e->category_stats->{sports}{recall}, "\n";
Or to print certain statistics for all categtories:
my $stats = $e->category_stats;
while (my ($cat, $value) = each %$stats) {
print "Category '$cat': \n";
print " Accuracy: $value->{accuracy}\n";
print " Precision: $value->{precision}\n";
print " F1: $value->{F1}\n";
}
AUTHOR
Ken Williams
COPYRIGHT
Copyright 2002-2008 Ken Williams. All rights reserved.
This distribution is free software; you can redistribute it and/or
modify it under the same terms as Perl itself.